PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G074124_P02
Common NameIDP681, YAB6
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 113aa    MW: 12667.5 Da    PI: 7.2162
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G074124_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY103.64.1e-32889388
              YABBY  3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88
                       +   +e+vCyv+CnfCntilavsvPs s++++vtvrCGhCtsllsvnl+   q l++++h   +     +e+  v+++ +++n+ +
  GRMZM2G074124_P02  8 IAPVPEHVCYVHCNFCNTILAVSVPSHSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNHHYSQQ----QENFTVQNMGFTENYPE 89
                       56789******************************************************944444....44444444444444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.4E-291279IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MSSAPLQIAP VPEHVCYVHC NFCNTILAVS VPSHSMLNIV TVRCGHCTSL LSVNLRGLIQ  60
SLPVQNHHYS QQQENFTVQN MGFTENYPEY APSYRMPTTL SAKGDLDHML HVR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.88270.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G074124
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G074124_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420100.0BT042010.1 Zea mays full-length cDNA clone ZM_BFb0106K19 mRNA, complete cds.
GenBankBT0656610.0BT065661.1 Zea mays full-length cDNA clone ZM_BFc0008C02 mRNA, complete cds.
GenBankKJ7268410.0KJ726841.1 Zea mays clone pUT3381 C2C2-YABBY transcription factor (YAB6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141765.15e-79uncharacterized protein LOC100273901
RefseqXP_008644640.24e-79protein YABBY 2
SwissprotQ10FZ73e-45YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A1D6GLC61e-78A0A1D6GLC6_MAIZE; C2C2-YABBY-transcription factor 6
STRINGGRMZM2G074124_P042e-78(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-20YABBY family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]