PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G074124_P03
Common NameIDP681
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 147aa    MW: 16694.9 Da    PI: 7.2023
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G074124_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY286.8e-09831326
              YABBY  3 vfssseqvCyvqCnfCntilavsv 26
                       +   +e+vCyv+CnfCntila + 
  GRMZM2G074124_P03  8 IAPVPEHVCYVHCNFCNTILAENF 31
                       56789***************9775 PP
2YABBY129.73.9e-404712197170
              YABBY  97 ssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        +s+++  + + + ++ ++ + +r PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  GRMZM2G074124_P03  47 PSYRMptTLSAKGDLDHMLH-VRAPEKRQRVPSAYNRFIKEEIRRIKACNPDISHREAFSTAAKNWAHFPNIHFGL 121
                        33333222233344444444.89***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.0E-61232IPR006780YABBY protein
PfamPF046902.5E-3760121IPR006780YABBY protein
SuperFamilySSF470954.19E-866115IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.6E-567115IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSSAPLQIAP VPEHVCYVHC NFCNTILAEN FTVQNMGFTE NYPEYAPSYR MPTTLSAKGD  60
LDHMLHVRAP EKRQRVPSAY NRFIKEEIRR IKACNPDISH REAFSTAAKN WAHFPNIHFG  120
LGPCESSNNL DEATGAMCHP QKVQDLY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.88270.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G074124
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G074124_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420100.0BT042010.1 Zea mays full-length cDNA clone ZM_BFb0106K19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141765.11e-101uncharacterized protein LOC100273901
SwissprotQ10FZ77e-63YAB2_ORYSJ; Protein YABBY 2
TrEMBLB4FY221e-99B4FY22_MAIZE; C2C2-YABBY transcription factor
STRINGGRMZM2G074124_P041e-100(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-38YABBY family protein