PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G074543_P01
Common NameZm.11824
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 109aa    MW: 11977.7 Da    PI: 7.8411
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G074543_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY75.41.8e-232561134170
              YABBY 134 keeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        ++eiqrika+nP+ishreafsaaaknWahfP+ihfgl
  GRMZM2G074543_P01  25 RDEIQRIKAGNPNISHREAFSAAAKNWAHFPHIHFGL 61 
                        78*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.3E-212561IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MHRSDVSLLL FFFLLALSLG EYDCRDEIQR IKAGNPNISH REAFSAAAKN WAHFPHIHFG  60
LMPDHQGLKT TSLLPQDHQR KDGLLKEGLY AAAAAAAAHA AANMGIAPY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G074543
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G074543_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3139031e-141AY313903.1 Zea mays yabby9 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105231.15e-55yabby 9
SwissprotQ8L5566e-44YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A1D6GNF39e-54A0A1D6GNF3_MAIZE; Yabby9 protein
TrEMBLQ7X9M71e-53Q7X9M7_MAIZE; Yabby9 protein
STRINGGRMZM2G074543_P047e-54(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-29YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]