PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G074543_P04
Common NameZm.11824
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 337aa    MW: 35413.2 Da    PI: 8.6125
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G074543_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY23.12.2e-074667528
              YABBY  5 ssseqvCyvqCnfCntilavsvPs 28
                        ++eq+Cyv+C fC+t+l+v    
  GRMZM2G074543_P04 46 PAAEQLCYVHCYFCDTVLVVP--L 67
                       6789**************974..4 PP
2YABBY40.31.1e-12841192055
              YABBY  20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 
                        t + vsvP++slfk+vtvrCGhC+sll+v+++    
  GRMZM2G074543_P04  84 TWVQVSVPTSSLFKTVTVRCGHCSSLLTVDMRGLLF 119
                        5678*************************9987665 PP
3YABBY127.71.6e-39224289106170
              YABBY 106 deevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        +e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nP+ishreafsaaaknWahfP+ihfgl
  GRMZM2G074543_P04 224 KEPSPRANPaVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPNISHREAFSAAAKNWAHFPHIHFGL 289
                        56678887779*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.1E-54872IPR006780YABBY protein
PfamPF046902.9E-4984289IPR006780YABBY protein
SuperFamilySSF470951.44E-7230282IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.6E-4238281IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSSSSSSSSS SAATVFPRSP QLPPPVLVEN GLTPLHQLTP VAAAAPAAEQ LCYVHCYFCD  60
TVLVVPLSCL NLKDFHKLEG VPGTWVQVSV PTSSLFKTVT VRCGHCSSLL TVDMRGLLFP  120
GTPTDTVAGA APPPAADTST TTTTITTAPP PANSVNNGQF HLPHSLNHPH HQSLLVDEIS  180
SAANPSLQLQ LEQHGGLGGL ILGGSRNTAA PPPPQPPAAG KGAKEPSPRA NPAVNRPPEK  240
RQRVPSAYNR FIKDEIQRIK AGNPNISHRE AFSAAAKNWA HFPHIHFGLM PDHQGLKTTS  300
LLPQDHQRKD GLLKEGLYAA AAAAAAHAAA NMGIAPY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.118240.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G074543
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G074543_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279910.0KJ727991.1 Zea mays clone pUT6111 C2C2-YABBY transcription factor (YAB9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105231.11e-162yabby 9
SwissprotQ8L5562e-89YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A3L6ER461e-168A0A3L6ER46_MAIZE; Protein YABBY 3
STRINGGRMZM2G074543_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Representative plantOGRP1300345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.18e-43YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]