PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G075122_P01
Common NameIDP157
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 189aa    MW: 20587.8 Da    PI: 7.6788
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G075122_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731131.9e-3579178297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 
                        lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg  ++f+++h+q if
  GRMZM2G075122_P01  79 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFTFRSPHEQAIF 170
                        79************************99877778***************************************8999*************** PP

             DUF573  90 elskkiWg 97 
                        e+++ iW+
  GRMZM2G075122_P01 171 EIARNIWR 178
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-3180177IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPPTGDDPSA AAGISFPDAG GGGDSEDGDF AGSHLLDPTD PGLPNPTTSS ATGLPHAIPA  60
AGSGGGPVTS GNGGERRPLF QRLWTEEDEI VILRGFAEFT AARGTAFASH QYDTDPFYED  120
MRRRLQLDFS KSQLVEKLRR LKRKYRNCVS RLRESGATFT FRSPHEQAIF EIARNIWRPA  180
KQTRPRSLG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.836230.0meristem| pollen| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G075122
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G075122_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341430.0BT034143.1 Zea mays full-length cDNA clone ZM_BFc0032C15 mRNA, complete cds.
GenBankJX4285180.0JX428518.1 Zea mays subsp. mays clone pUT3117 GBP6 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130793.11e-129uncharacterized protein LOC100191897
SwissprotQ9CAV74e-34STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A3L6FVK31e-127A0A3L6FVK3_MAIZE; Putative transcription factor
TrEMBLB4FAK51e-127B4FAK5_MAIZE; Putative transcription factor
TrEMBLK0D9S51e-127K0D9S5_MAIZE; GBP6 GeBP type transcription factor (Fragment)
STRINGGRMZM2G075122_P021e-128(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-36DNA-binding storekeeper protein-related transcriptional regulator