PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G075562_P02
Common NameLOC100304421
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 232aa    MW: 25112.2 Da    PI: 5.2386
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G075562_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.3e-07445540
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        C+ +++++  ++C+++   lC +C  + H+       Ht++
  GRMZM2G075562_P02  4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                       7*****************************657888889876 PP
2zf-B_box292.2e-094788540
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        C+++++++++  C +++  lC++C  ++H        H+++
  GRMZM2G075562_P02 47 LCDRCGSQPASVRCLEDNASLCQNCDWNGHDAesgasgHKRQ 88
                       7*****************************446778888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
SMARTSM003361.6E-10147IPR000315B-box-type zinc finger
CDDcd000213.34E-5447No hitNo description
PROSITE profilePS501199.6134390IPR000315B-box-type zinc finger
PfamPF006432.2E-64788IPR000315B-box-type zinc finger
CDDcd000214.75E-74790No hitNo description
SMARTSM003360.00514890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MASLCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPASVRC  60
LEDNASLCQN CDWNGHDAES GASGHKRQAI NCYSGCPSSA ELSRIWSFIT DIPTVAAEPD  120
YEDGLSMMTI DGSDVTNRHD TSDDKRLLEI ANTTLMSDPP SADKLKSPTG SSSGDGFDVM  180
TLATDQPAGP VSATPKVLLG FHIFLQECFS TLCSVFACQK TCCLWHASYL NI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.799560.0ear| leaf| meristem| ovary| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G075562
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G075562_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9572390.0EU957239.1 Zea mays clone 1586620 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159328.11e-141uncharacterized protein LOC100304421
RefseqXP_008643907.11e-141uncharacterized protein LOC100304421 isoform X1
SwissprotQ9LUA96e-59COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A1D6HIX41e-171A0A1D6HIX4_MAIZE; Zinc finger protein CONSTANS-LIKE 9
STRINGGRMZM2G075562_P011e-140(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-61B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]