PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G076327_P01

Common Name

LOC103638452

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

LBD

Protein Properties

Length: 245aa MW: 25337.5 Da PI: 6.8469

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G076327_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129	2.1e-40	34	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+++Cv+apyf +eq +++fa+vhk+FGasnv+kll ++p+++r da+ +++yeA+ar+rdPvyG+v+++++lqqq+ +l+ GRMZM2G076327_P01 34 PCGACKFLRRKCVTGCVFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQVPPHKRLDAVVTVCYEAQARIRDPVYGCVSHVFALQQQVVNLQ 125 7*********************9989************************************************************ PP DUF260 92 aelallkee 100 +el +l+ + GRMZM2G076327_P01 126 TELTYLQGH 134 *998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.14	33	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-39	34	132	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSSSVLGASA GGGGGGSSTG GPTRGVAGAG GGGPCGACKF LRRKCVTGCV FAPYFDSEQG 60 AAHFAAVHKV FGASNVSKLL LQVPPHKRLD AVVTVCYEAQ ARIRDPVYGC VSHVFALQQQ 120 VVNLQTELTY LQGHLSTMEP PTPPPLAAQN QMPMTTAAFC VSNLPWPSND IPPTVDVSTL 180 LEEPQTQQSN WVSQQQQHYV MVGEGSGAGV SGSGAGARGG GDLQLLDRHG TAPVWSQPEP 240 PPCTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-39	30	128	7	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-39	30	128	7	104	LOB family transfactor Ramosa2.1
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Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G076327

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269\|PubMed:12068116, ECO:0000269\|PubMed:19088331}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G076327_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008659582.1	1e-179	LOB domain-containing protein 30
Swissprot	O81323	3e-64	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A1D6KC74	1e-178	A0A1D6KC74_MAIZE; LOB domain-containing protein 31
TrEMBL	A0A317Y8V9	1e-178	A0A317Y8V9_MAIZE; LOB domain-containing protein 30
STRING	GRMZM2G076327_P01	1e-179	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82
Representative plant	OGRP405	15	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	9e-61	LBD family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G076327_P01
Entrez Gene	103638452

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]