PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G077045_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 526aa    MW: 59811.4 Da    PI: 6.0221
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G077045_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.51.1e-183014301128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                        lp+G++F+P+d++l+  +L+++v +         +e+ +++++v + + ++P+++p  v+++ +  yfF+++ + y +++  n       Wk
  GRMZM2G077045_P02 301 LPRGVEFNPSDSDLL-WHLAAEVGNALaerhpfiNEFIKFVDDVrEFICTHPQHIP-GVRQDGRASYFFHRSFEPYINENDVNN-----CWK 385
                        699************.7788888776655656633333357787778999******.677888999**********98766666.....5** PP

                NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        + g++ +++  +g+l+g+k+++++y    +++++++tdW +h+y+l
  GRMZM2G077045_P02 386 KIGSHISIIL-DGTLMGCKEVFALYadMPSDKRSQETDWRLHQYHL 430
                        **********.999***********5434788889**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF167192.0E-1089158IPR032001SAWADEE domain
SuperFamilySSF525402.6E-8179264IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000044.1E-8186247IPR003959ATPase, AAA-type, core
Gene3DG3DSA:3.40.50.3001.8E-9187264IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF1019418.63E-22296447IPR003441NAC domain
PROSITE profilePS5100520.983301448IPR003441NAC domain
PfamPF023656.6E-8302430IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEAANRFTDH GASPSRAGSL ENRIIGSAEV PRRFGYEALE LRNGGSDYFG KGVLKVEEET  60
GIKLNIEDMV DLMTLLDPAT GGRMLPSLQD EWYDPAALAA SSAWDVAKLR ARFCVPSTPV  120
EDTQCRDLHA GARLCVSCSL DDVNLKFYDV VLDSTKSLMD DIHEWGVLFD GRVGDRTITS  180
RQWMKAAAGS GGERVAAVFS LAHKLQPAII FIDEVDSFLG QRRTTDHEAM TNMKTEFMSL  240
WDGFTTDRHL PKHRRLQPAI NRRFGSLTSQ NLDISQPNFE ANPPDGVLAV PLLRHQSWPG  300
LPRGVEFNPS DSDLLWHLAA EVGNALAERH PFINEFIKFV DDVREFICTH PQHIPGVRQD  360
GRASYFFHRS FEPYINENDV NNCWKKIGSH ISIILDGTLM GCKEVFALYA DMPSDKRSQE  420
TDWRLHQYHL QNTVKAESEI VASKIFLASR NSLCELAKET HIESEWWKET VGDESREFGR  480
YMRQREEQEK QEAELFTRAP VTKHDKQIEK RIRRQLHGEK IYSCSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w0t_A1e-14189244119174Protein MSP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.369940.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G077045
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G077045_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278480.0KJ727848.1 Zea mays clone pUT5892 NAC transcription factor (NAC102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G077045_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Representative plantOGRP365846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-33NAC family protein