PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G079185_P01
Common NameLOC100384360
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 199aa    MW: 20689.5 Da    PI: 7.8397
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G079185_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.45.9e-44281271100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++Cv+apyfp  +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdPvyG+vg i++lq+q+e l+a
  GRMZM2G079185_P01  28 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPAQHRGDAVSSLVYEANARVRDPVYGCVGAISSLQEQVEALQA 119
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +lal+++e
  GRMZM2G079185_P01 120 QLALAQAE 127
                        ****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.86927128IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4328125IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0009025anatomyvascular leaf
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRDAVVVMAV PGGGGGGGGS ASSAAAAPCA ACKLLRRRCA AGCVFAPYFP PGEPHKFANV  60
HKVFGASNVS KLLQEIPAQH RGDAVSSLVY EANARVRDPV YGCVGAISSL QEQVEALQAQ  120
LALAQAEMVR LRMTNDYIVH RLKAASRAGG GGSSYAGSPS SMSSPKTAEP EAHCKATPEL  180
LDMVVDQPGM DDAHFWSSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-51221305113LOB family transfactor Ramosa2.1
5ly0_B8e-51221305113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.299570.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G079185
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G079185_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699110.0BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170378.11e-144uncharacterized protein LOC100384360
SwissprotQ8LBW32e-56LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1D6GL541e-143A0A1D6GL54_MAIZE; LOB domain-containing protein 4
STRINGGRMZM2G079185_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-36LOB domain-containing protein 4
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]