PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G080054_P01
Common NamebHLH148, Zm.15974
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 185aa    MW: 21262 Da    PI: 9.7253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G080054_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.83.5e-172268455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        hn  ErrRRd+iN+++  L+ellP++      K +K+++L +A++Y+ksLq
  GRMZM2G080054_P01 22 FHNFSERRRRDKINEKLKALQELLPNC-----NKTDKVSMLDEAIDYLKSLQ 68
                       59************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-201575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-211683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.2981867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.20E-172172No hitNo description
PfamPF000102.0E-142368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-182473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEDGSAPRRS TPPTRRSRSA EFHNFSERRR RDKINEKLKA LQELLPNCNK TDKVSMLDEA  60
IDYLKSLQLQ LQMLVMGKGM SPVVPLELQQ YMHYITADPA QLPPLRPSGQ QHRQFQITQA  120
NPQRQSNVES DFLSQMQNLH SSEPPQNFLR PPKLQLYTPE QRGGLPNTSH NTGWISGSSS  180
YNFME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
22732RRRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1585650.0embryo
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G080054
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G080054_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524830.0EU952483.1 Zea mays clone 1281977 protein SPATULA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146943.11e-135uncharacterized LOC100280552
RefseqXP_008667885.11e-135protein SPATULA isoform X1
RefseqXP_008667886.11e-135protein SPATULA isoform X3
RefseqXP_008667887.11e-135protein SPATULA isoform X3
SwissprotQ0JNI91e-30PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A1D6DZ901e-134A0A1D6DZ90_MAIZE; Protein SPATULA
TrEMBLA0A1D6DZ931e-134A0A1D6DZ93_MAIZE; Protein SPATULA
TrEMBLB6SIB81e-134B6SIB8_MAIZE; BHLH transcription factor
STRINGGRMZM2G080054_P011e-135(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-27phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]