PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G080509_P01
Common NameLOC100282175, Zm.94484
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 357aa    MW: 37998.3 Da    PI: 4.8908
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G080509_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16272308135
               GATA   1 CsnCg..ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg  +t Tp++Rrgpdg++tLCnaCGl+++ kgl
  GRMZM2G080509_P01 272 CHHCGinATATPMMRRGPDGPRTLCNACGLMWANKGL 308
                        ****733666***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.373137172IPR010399Tify domain
SMARTSM009799.6E-12137172IPR010399Tify domain
PfamPF062005.5E-13140171IPR010399Tify domain
PfamPF062037.1E-16196238IPR010402CCT domain
PROSITE profilePS5101713.304196238IPR010402CCT domain
PROSITE profilePS501149.46266314IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-11266319IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-12270319No hitNo description
CDDcd002022.80E-14271314No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15271313IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.6E-14272308IPR000679Zinc finger, GATA-type
PROSITE patternPS003440272299IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSHSHHDGSK PYQPRRGPER PPQPADGIAV PPPAAVAPSV EHLVAAAAEA EALSRLGAEQ  60
QQLLQGHEQE VGEEEGEDEE EDEMEDDDDD DDEQEGQHGG IGVEHVPMDA DAAAAAAVAA  120
AGAQMDPHSV LVPGTVPPMA TNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELSSLSG  180
ASSSAPYSKR LNFPHRVASL MRFREKRKER NFDKKIRYNV RKEVALRMQR NRGQFTSSKP  240
KPDEIAASEM AAADGSLNWA LVEGRPPSAA ECHHCGINAT ATPMMRRGPD GPRTLCNACG  300
LMWANKGLLR DLSKSPVPLH SIQQSAPILN GGNGSAMSAL GSELENAAAA MGNGHEP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.944840.0aerial organ| ear| endosperm| meristem| ovary| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G080509
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G080509_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5128740.0KU512874.1 Zea mays TIFY23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647837.10.0GATA transcription factor 25 isoform X2
SwissprotQ5Z4U51e-132GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A1D6LNQ50.0A0A1D6LNQ5_MAIZE; GATA transcription factor 24
STRINGGRMZM2G080509_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-64ZIM-like 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]