PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G083347_P01
Common NameZEAMMB73_391358
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 259aa    MW: 27865.6 Da    PI: 10.6607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G083347_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.82.2e-45121481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        lppGfrF+Ptdeel+v+yL++++ +++l+++  i++v+i+ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+
  GRMZM2G083347_P01  12 LPPGFRFRPTDEELIVHYLRRRALASPLPAAVDIPDVRILAHDPSDLlP--PGFGEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKP 101
                        79***************************9666**************43..345889*********************************** PP

                NAM  92 vlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v ++          +g lvg+k++Lvfy+g+ p+g+kt+Wvmheyrl
  GRMZM2G083347_P01 102 VAVAvrgvqgqgqgQGVLVGMKRSLVFYRGKPPTGSKTEWVMHEYRL 148
                        *99988887766555556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-4910184IPR003441NAC domain
PROSITE profilePS5100548.6212184IPR003441NAC domain
PfamPF023652.4E-2613148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEVKKEGAKA TLPPGFRFRP TDEELIVHYL RRRALASPLP AAVDIPDVRI LAHDPSDLLP  60
PGFGEQERYF FTCKEAKYVK GRRANRATGA GYWKATGKEK PVAVAVRGVQ GQGQGQGVLV  120
GMKRSLVFYR GKPPTGSKTE WVMHEYRLAG AGLAPCRRRH ADADGDGVAR APAEGWVLCR  180
VFRKKGSAAV ARRPGDRSDG EGDESAGGGG GCGGRGFIDF FARADAAGRR RRAPSPAVSS  240
RWLADASPQP EQEATSRGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-40818813169NO APICAL MERISTEM PROTEIN
1ut4_B9e-40818813169NO APICAL MERISTEM PROTEIN
1ut7_A9e-40818813169NO APICAL MERISTEM PROTEIN
1ut7_B9e-40818813169NO APICAL MERISTEM PROTEIN
4dul_A9e-40818813169NAC domain-containing protein 19
4dul_B9e-40818813169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.794690.0endosperm| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G083347
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G083347_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662554.10.0NAC domain-containing protein 83
SwissprotQ9FY938e-53NAC83_ARATH; NAC domain-containing protein 83
TrEMBLK7TJD60.0K7TJD6_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G083347_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-41NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]