PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G083347_P02
Common NameLOC103640878, ZEAMMB73_391358
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 123aa    MW: 13179.4 Da    PI: 10.5517
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G083347_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.82.3e-151272159
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.kkvkaeekewy 59
                       lppGfrF+Ptdeel+v+yL++++ +++l+++  i++v+i+ ++P+dL p ++  ++++ w+
  GRMZM2G083347_P02 12 LPPGFRFRPTDEELIVHYLRRRALASPLPAAVDIPDVRILAHDPSDLlPpECGCSKSRPWH 72
                       79***************************9666*************963344444455665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-161079IPR003441NAC domain
PROSITE profilePS5100515.58112123IPR003441NAC domain
PfamPF023652.3E-81378IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEVKKEGAKA TLPPGFRFRP TDEELIVHYL RRRALASPLP AAVDIPDVRI LAHDPSDLLP  60
PECGCSKSRP WHRSSSRNAS PPAAAAACHG GGGLLVLMFH RLLIAEKQVA GVVAGSRRKM  120
AGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.794691e-95endosperm| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G083347
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G083347_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9763460.0EU976346.1 Zea mays clone 865808 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662554.18e-35NAC domain-containing protein 83
TrEMBLK7TJD62e-33K7TJD6_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G083347_P013e-34(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-08NAC domain containing protein 47