PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G084583_P02
Common NameZm.155123
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 114aa    MW: 12893.9 Da    PI: 9.1625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G084583_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  GRMZM2G084583_P02 14 RGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                       89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129423.17965IPR017930Myb domain
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002495.2E-161461IPR001005SANT/Myb domain
SuperFamilySSF466892.1E-231590IPR009057Homeodomain-like
CDDcd001675.42E-111661No hitNo description
PROSITE profilePS500904.63562105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.0E-106596IPR009057Homeodomain-like
SMARTSM007176166111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MGRSPCCEKA HTNRGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TADEDDLIVK LHSLLGNKYV RDASAAALLR TVVHCTRTCL PLEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-16139926108MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.96671e-120meristem| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G084583
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G084583_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741190.0AF474119.1 Zea mays typical P-type R2R3 Myb protein (Myb26) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664600.16e-59myb-related protein Zm38
SwissprotP200257e-60MYB38_MAIZE; Myb-related protein Zm38
TrEMBLA0A1D6KN591e-57A0A1D6KN59_MAIZE; Myb transcription factor38
TrEMBLQ8S3Z82e-58Q8S3Z8_MAIZE; Typical P-type R2R3 Myb protein (Fragment)
STRINGGRMZM2G084583_P012e-58(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-59myb domain protein 4
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]