PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G085964_P02
Common Namecl15281_1(600)
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 192aa    MW: 19844.5 Da    PI: 8.7283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G085964_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-2052100355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+G+r+++ +grW+AeIrdp++    +r++lg++ t+e+Aa+a++ a+++++g
  GRMZM2G085964_P02  52 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRG 100
                        9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-3251108IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2351109IPR016177DNA-binding domain
PROSITE profilePS5103224.89551108IPR001471AP2/ERF domain
PfamPF008473.2E-1451100IPR001471AP2/ERF domain
SMARTSM003809.0E-3651114IPR001471AP2/ERF domain
CDDcd000181.24E-2752110No hitNo description
PRINTSPR003671.6E-105263IPR001471AP2/ERF domain
PRINTSPR003671.6E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MCGGAIIADF VPAGARRPAT DDTMSASILS GEDHPELPLP LPAPAPGRKT AYRGIRRRPW  60
GRWAAEIRDP RKGARVWLGT YATPEDAARA YDVAAREIRG PKAKLNFPPA VGGGARAPAP  120
AAAKRRRKSA ATEESSASSP PPPAAAAAVV VAGGGEEALR DCMSGLEAFL GLQNADEGGG  180
VEAWDAVDLM LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2152114669ATERF1
3gcc_A5e-2152114669ATERF1
5wx9_A2e-20521151579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.67560.0endosperm| meristem| root| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G085964
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G085964_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643970.0BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146860.11e-131uncharacterized protein LOC100280468
TrEMBLC0P7X81e-129C0P7X8_MAIZE; Uncharacterized protein
STRINGPavir.J05942.1.p1e-79(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-31ERF family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]