PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G086072_P01
Common Namepco085006, Zm.2249
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 386aa    MW: 41494.9 Da    PI: 6.5202
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G086072_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.4e-27129215371
            E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  GRMZM2G086072_P01 129 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 215
                        689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.4E-12826386IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.3E-45123221IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-38127215IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.1E-25130215IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.9E-20130216IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.04E-43220323IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.49E-42222338No hitNo description
SMARTSM011382.1E-77222384IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-41223357IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVSGAAPNPD GGGAQNTQRP PPLTQAGART ALATPPAVSG GAAHSASTSG GSAGSPPSSR  60
SEQHAPDGAA KGPALGAAPA AAASTPASDS TFLRLNNLDI NGDDAPSSQA PTSKKKRRGT  120
RAVGPDKGNR GLRQFSMKVC EKVESKGRTT YNEVADELVA EFTDPNNNIE APDPDNPNAQ  180
QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS ISDIEEMKTE LVGLKGRIEK  240
KSAYLQELQD QYVGLQNLIQ RNEQSYGSGN TPSGGVALPF ILVQTRPHAT VEVEISEDMQ  300
LVHFDFNSTP FELHDDSYVL KEMRFCGREQ HDSTQESISN GGESSSVSNI YWQHVQHVER  360
PNNGTGRLPS SPPIPGILKG RAKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-34121220193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.22490.0meristem| ovary| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G086072
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G086072_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9655130.0EU965513.1 Zea mays clone 286553 transcription factor Dp-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150052.20.0uncharacterized protein LOC100283679
SwissprotQ9FNY21e-136DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1D6JNY10.0A0A1D6JNY1_MAIZE; Transcription factor Dp-1
TrEMBLA0A317YFG10.0A0A317YFG1_MAIZE; Transcription factor-like protein DPB
STRINGGRMZM2G086072_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-135Transcription factor DP
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]