PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G086994_P03
Common NameLOC100284552
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 269aa    MW: 29544 Da    PI: 6.6904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G086994_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.5e-116288127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C +G+rC+++H++
  GRMZM2G086994_P03 62 PGEADCGYYLRTGACGFGERCRYNHPR 88
                       57899********************96 PP
2zf-CCCH38.22.4e-12112137227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C ++++tGtCk+G++Ck++H++
  GRMZM2G086994_P03 112 GQPVCEYYLKTGTCKFGSNCKYHHPK 137
                        7899********************96 PP
3zf-CCCH40.83.6e-13157182227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG+Ck+G++CkF+H++
  GRMZM2G086994_P03 157 GEKECSYYMKTGQCKFGSTCKFHHPE 182
                        7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-56188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6766189IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-86388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-66589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-46788IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483110138IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6115139IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812155183IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10157182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6158182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5161181IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEPPHTEEAA AAAAGGAEGG SASPGTGLEG PMLRLGLDGG GEGEDGELGA GEEADTWLPE  60
RPGEADCGYY LRTGACGFGE RCRYNHPRDR GGTEFGGGAK NGAAQYFPER QGQPVCEYYL  120
KTGTCKFGSN CKYHHPKQDG SVQSVILNNN GFPLRPGEKE CSYYMKTGQC KFGSTCKFHH  180
PEFGGIPVTR SSWIIYSRLI HSNGAPIWNG SIARMEPLSG TGKSCSIRWS TTNYSSWTII  240
WYRTPWIFHC NCLWWYILAI LFLNWTIEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1176180.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G086994
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G086994_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688300.0EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds.
GenBankKJ7268450.0KJ726845.1 Zea mays clone pUT3385 C3H transcription factor (C3H35) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150919.11e-105zinc finger CCCH type domain-containing protein ZFN-like 1
SwissprotQ5NAW25e-85C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLB6TV151e-103B6TV15_MAIZE; C3H transcription factor
STRINGGRMZM2G086994_P011e-104(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.12e-54C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]