PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G087032_P03
Common NameLOC100194377
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 320aa    MW: 35249.9 Da    PI: 9.0661
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G087032_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-121135327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C+++++tGtCk+G++CkF+H++
  GRMZM2G087032_P03 11 QPECQYYLKTGTCKFGPTCKFHHPR 35
                       799********************96 PP
2zf-CCCH31.23.9e-105781327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C ++++tG+Cky ++CkF+H++
  GRMZM2G087032_P03 57 EKECAYYLKTGHCKYANTCKFHHPE 81
                       679********************96 PP
3zf-CCCH40.25.8e-13208233227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG Ck+G+ CkF+H++
  GRMZM2G087032_P03 208 DEPECQYYMKTGDCKFGAVCKFHHPR 233
                        789*********************96 PP
4zf-CCCH42.41.2e-13253278126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++elC+f++r+G+Ck+G++CkF H+
  GRMZM2G087032_P03 253 PGEELCKFYSRYGICKFGANCKFDHP 278
                        689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-5835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751836IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-101135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-61237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-51436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7135482IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-45481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-55581IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-75781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-46080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695206234IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5206233IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9208233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5209233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4212232IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7252279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741252280IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-11254278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6254278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5256277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKGEYPERAG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGRVQLNTSG YPLRPNEKEC  60
AYYLKTGHCK YANTCKFHHP ELFNVVPSSR GSPIYTSVHS SASAGPQSYT GTMPSWAFPR  120
ASFIPSPRWQ SPSNYAPMIV PQGLVQMQSW NSYTGQLQSP GAQQTYGSSQ QGEASTGNQG  180
MLSPYRPSSF PVPQYALQRE NVFPERPDEP ECQYYMKTGD CKFGAVCKFH HPRVRSLPPP  240
DCVLSPMGLP LRPGEELCKF YSRYGICKFG ANCKFDHPTV VAPMVYAYGF SASASPASAS  300
TNVPMARRLL GSPPGSGYTS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.971610.0endosperm| glume| leaf| meristem| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G087032
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G087032_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0351660.0BT035166.1 Zea mays full-length cDNA clone ZM_BFb0043B23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132883.10.0uncharacterized protein LOC100194377
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1D6N3850.0A0A1D6N385_MAIZE; Zinc finger CCCH domain-containing protein 33
STRINGGRMZM2G087032_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-116zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]