PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G087032_P04
Common NameLOC100194377
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 192aa    MW: 20757.7 Da    PI: 7.99
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G087032_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-1174100127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C +++rtG C++G +C+F+H+p
  GRMZM2G087032_P04  74 PGEPDCTYYLRTGLCRFGMSCRFNHPP 100
                        5789*********************97 PP
2zf-CCCH39.69e-13121145327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tGtCk+G++CkF+H++
  GRMZM2G087032_P04 121 QPECQYYLKTGTCKFGPTCKFHHPR 145
                        799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.97173101IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-573100IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-875100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-678101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-47999IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751118146IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5118145IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10121145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7122147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5124146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDDAGRPPPH APVAVTASAS ASATAAPAPP QPSATAAVDR SSPDPDALYE EGMWQQMAMD  60
SGATMQPGSY PERPGEPDCT YYLRTGLCRF GMSCRFNHPP DRNLAIASAR MKGEYPERAG  120
QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGRVQLNTSG YPLRPVCLPL PFISPLLHMS  180
VCFAEKKSTL LL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.877170.0aerial organ| endosperm| leaf| meristem| ovary| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G087032
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G087032_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0561580.0BT056158.1 Zea mays full-length cDNA clone ZM_BFb0051F02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008672228.14e-98uncharacterized LOC100194377 isoform X1
SwissprotQ5JLB56e-78C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLB8A3L61e-139B8A3L6_MAIZE; Zinc finger CCCH domain-containing protein 33
STRINGGRMZM2G087032_P016e-97(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-61zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]