PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G087817_P01
Common NameLOC100273130
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 212aa    MW: 23851.6 Da    PI: 9.5343
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G087817_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-14556147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                       ++rWT+eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
  GRMZM2G087817_P01  5 KQRWTPEEEAALKAGVAKHGPGKWRTILRDSDfsallRLRSNVDLKDKWRNL 56
                       79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.892161IPR017930Myb domain
SuperFamilySSF466891.65E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-14356IPR009057Homeodomain-like
SMARTSM007176.4E-8459IPR001005SANT/Myb domain
PfamPF002496.3E-10556IPR001005SANT/Myb domain
CDDcd116601.79E-18656No hitNo description
SuperFamilySSF467853.37E-14122184IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-14123184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.8E-10124187IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150418.876124209IPR005818Linker histone H1/H5, domain H15
PfamPF005384.6E-9129184IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000781Cellular Componentchromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGVPKQRWTP EEEAALKAGV AKHGPGKWRT ILRDSDFSAL LRLRSNVDLK DKWRNLSVTA  60
GGYGSREKAR MALKKGRRVV PKLTAEPMDV DEKDMDNAHD TVIDVEPLAM AFEPLPFLES  120
PDKSVARLDD LIVEAIRKLN EPSGSNKAVI SGYIEDQYWP PADFQYLLST KLKSLVNSGK  180
LIKVCPSLLP WLVFLGIKWG LQAAYYLNRD CR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.976930.0embryo| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G087817
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G087817_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402780.0BT040278.1 Zea mays full-length cDNA clone ZM_BFc0075J17 mRNA, complete cds.
GenBankEU9622280.0EU962228.1 Zea mays clone 241094 single myb histone 1 mRNA, complete cds.
GenBankJX4699470.0JX469947.1 Zea mays subsp. mays clone UT3208 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141049.11e-133single myb histone 2
SwissprotB4FT401e-134SMH2_MAIZE; Single myb histone 2
TrEMBLA0A1D6NKZ51e-131A0A1D6NKZ5_MAIZE; Telomere repeat-binding factor 1
STRINGGRMZM2G087817_P021e-132(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.37e-59telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]