PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G088440_P01

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

TCP

Protein Properties

Length: 182aa MW: 21139.2 Da PI: 9.1048

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G088440_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	66.1	1.2e-20	1	54	22	71
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssas 71 +Rls+ +a++fF+Lqd+LGfdk+ kt++WLl q+kpai+ l++ ++ s++ GRMZM2G088440_P01 1 MRLSVGVAREFFKLQDRLGFDKANKTVNWLLAQSKPAIDRLNRIigveKTASQQ 54 8****************************************9996655222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	22.766	1	41	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.1E-18	1	58	IPR005333	Transcription factor, TCP
SMART	SM00271	1.8E-17	39	97	IPR001623	DnaJ domain
PROSITE profile	PS50076	18.486	40	105	IPR001623	DnaJ domain
PRINTS	PR00625	2.7E-17	42	60	IPR001623	DnaJ domain
Gene3D	G3DSA:1.10.287.110	4.3E-23	43	130	IPR001623	DnaJ domain
SuperFamily	SSF46565	7.85E-22	43	127	IPR001623	DnaJ domain
CDD	cd06257	9.21E-18	44	94	IPR001623	DnaJ domain
Pfam	PF00226	3.1E-21	44	102	IPR001623	DnaJ domain
PRINTS	PR00625	2.7E-17	60	75	IPR001623	DnaJ domain
PRINTS	PR00625	2.7E-17	77	97	IPR001623	DnaJ domain
PRINTS	PR00625	2.7E-17	97	116	IPR001623	DnaJ domain

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MRLSVGVARE FFKLQDRLGF DKANKTVNWL LAQSKPAIDR LNRIIGVEKT ASQQEIKKVY 60 HKLALRLHPD KNPGDEETKE KFQLLQKVIS ILGDAEKRAL YDETGITDDD ALVGEAANNL 120 QEYFRTMYKK VMEANIEEFE VKYRGSDSEK MDLKELYTKY KGNMNRNSYL LYHIVKSETV 180 LL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2dmx_A	2e-16	44	106	14	77	DnaJ homolog subfamily B member 8
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.94447	0.0	cell culture\| embryo\| leaf\| meristem\| ovary\| pericarp\| pollen\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G088440

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaves, flowers and siliques, and to lower extent in roots. {ECO:0000269\|Ref.1}.

Functional Description ? help Back to Top
Source	Description
UniProt	Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G088440_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041769	0.0	BT041769.1 Zea mays full-length cDNA clone ZM_BFb0049O18 mRNA, complete cds.
GenBank	BT068155	0.0	BT068155.1 Zea mays full-length cDNA clone ZM_BFb0066J15 mRNA, complete cds.
GenBank	EU964711	0.0	EU964711.1 Zea mays clone 281006 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001150767.1	1e-77	chaperone protein dnaJ 6
Swissprot	Q9FL54	5e-52	DNAJ6_ARATH; Chaperone protein dnaJ 6
TrEMBL	A0A3L6FXZ5	2e-95	A0A3L6FXZ5_MAIZE; Chaperone protein dnaJ 6
STRING	GRMZM2G088440_P01	1e-131	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	1e-12	TCP family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G088440_P01

Publications ? help Back to Top
Miernyk JA The J-domain proteins of Arabidopsis thaliana: an unexpectedly large and diverse family of chaperones. Cell Stress Chaperones, 2001. 6(3): p. 209-18 [PMID:11599562]