PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088443_P01
Common NamebHLH104, LOC100382374
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 261aa    MW: 27892.7 Da    PI: 10.73
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088443_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.8e-1176121454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+e+ErrRR+riN  +++Lr+++P       + ++Ka+ L ++ve +k L
  GRMZM2G088443_P01  76 VHSEAERRRRERINAHLATLRRMVPDT-----RQMDKATLLARVVEQVKLL 121
                        59************************8.....68*******9999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-1363127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.59672121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1276128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-876121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-1078127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.78E-5165235No hitNo description
Gene3DG3DSA:3.30.70.2601.2E-5165212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMPGSMAARQ PLQGKQELQP YDGRDPSALG AGGSPVLLPR QQESAAPPAV RVAPPPDMSS  60
SSGSGRSATE ARALKVHSEA ERRRRERINA HLATLRRMVP DTRQMDKATL LARVVEQVKL  120
LKRKASEAAT TTTQSTPLPP ETDEVSIELH TGDAGADRSV YIRASISCAD RPDLVAGLAQ  180
AFHGLRLKTV RANMTSLGGR ARHVFVLCME EGWGSAGAGA GASLRSLKEA VRQALARVAS  240
PETAYGSSPF QSKRQMILES H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.442870.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088443
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088443_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0640870.0BT064087.1 Zea mays full-length cDNA clone ZM_BFc0137C17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168590.10.0uncharacterized protein LOC100382374
RefseqXP_020405443.10.0putative HLH DNA-binding domain superfamily protein isoform X1
RefseqXP_020405444.10.0putative HLH DNA-binding domain superfamily protein isoform X2
TrEMBLC0P7180.0C0P718_MAIZE; BHLH transcription factor
STRINGGRMZM2G088443_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-23bHLH family protein