PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088443_P02
Common NameLOC100382374
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 107aa    MW: 11448 Da    PI: 11.7737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088443_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.4e-1076101429
                        HHHHHHHHHHHHHHHHHHHHHCTSCC CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk 29 
                         h+e+ErrRR+riN  +++Lr+++P 
  GRMZM2G088443_P02  76 VHSEAERRRRERINAHLATLRRMVPD 101
                        59***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-863103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.58272107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-776102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-876103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MMPGSMAARQ PLQGKQELQP YDGRDPSALG AGGSPVLLPR QQESAAPPAV RVAPPPDMSS  60
SSGSGRSATE ARALKVHSEA ERRRRERINA HLATLRRMVP DTRQVGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.206660.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088443
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088443_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0640871e-174BT064087.1 Zea mays full-length cDNA clone ZM_BFc0137C17 mRNA, complete cds.
GenBankKJ7268691e-174KJ726869.1 Zea mays clone pUT3410 bHLH transcription factor (bHLH104) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020405444.16e-67putative HLH DNA-binding domain superfamily protein isoform X2
TrEMBLC0P7182e-65C0P718_MAIZE; BHLH transcription factor
STRINGGRMZM2G088443_P013e-66(Zea mays)