PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088524_P02
Common NameLOC100216850
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 221aa    MW: 24851.2 Da    PI: 9.095
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088524_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-1598142347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ +++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky
  GRMZM2G088524_P02  98 PWTEEEHRKFLDGLRQLGKGDWRGISKGFVTTRTATQVASHAQKY 142
                        7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8690147IPR017930Myb domain
SuperFamilySSF466896.82E-1893147IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-1894146IPR006447Myb domain, plants
SMARTSM007172.9E-1095145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-1196141IPR009057Homeodomain-like
PfamPF002492.2E-1298142IPR001005SANT/Myb domain
CDDcd001671.62E-1098143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDMDRPEEEG QQRRETMTPV LLRLFGVDVH RGGGSGEPEE SPMDLRKSSS MPDLTINPLL  60
SPEEKEGCKG YASDDAELAS GQQKRRRRKA QDRKKGIPWT EEEHRKFLDG LRQLGKGDWR  120
GISKGFVTTR TATQVASHAQ KYFLRQTNPG MKKRRASLFD VGIADYKDNQ VPGPQSIVAA  180
KPAPTQEIIH TDRGDVPVIY ILLPLCFLLV LVVTENPRSE Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388KRRRRK
28394KRRRRKAQDRKK
38494RRRRKAQDRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.76750.0endosperm| glume| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088524
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088524_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0374470.0BT037447.1 Zea mays full-length cDNA clone ZM_BFb0169J18 mRNA, complete cds.
GenBankKJ7275380.0KJ727538.1 Zea mays clone pUT5398 MYB-related transcription factor (MYBR32) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136714.11e-144uncharacterized protein LOC100216850
SwissprotB8BI932e-74MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC512e-74MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLB4FK091e-143B4FK09_MAIZE; MYB-related transcription factor
STRINGGRMZM2G088524_P011e-144(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-31MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]