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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G089050_P01 |
| Common Name | LOC100281505 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
C3H |
| Protein Properties |
Length: 401aa MW: 44034.4 Da PI: 8.6865 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G089050_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 30.6 | 5.6e-10 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+elCr+f+r G CkyG+ C+F H
GRMZM2G089050_P01 5 QELCRNFQR-GSCKYGSHCRFVH 26
79*******.************* PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MDRRQELCRN FQRGSCKYGS HCRFVHASSQ QQQQAKPNPF GFGLGSRQQQ QQQSSFRAQF 60
QQQQQQKPNP FGFGVQGSAA AQSRNAPGQA KPFQNKWVRD PSAPTKQQEA AQPPAAAHTS 120
CTDPESCRQQ IAEDFKNETP LWKLTCYAHL RSGPCDITGD ISFEELRANA YEQGRQGHPL 180
QSIVEGEKNL KNAKLTDFNN FLNTPRLSVS QTPSFPTVAS FPEVKNNSAF GVSQNNGPPV 240
FSSFSQIGVT TNMGPGSRTT PGVPTNTLFG QSTQPSHPTF PAPTFGRSDM KFGVSGPFGS 300
QISQQSSGTF QGSNMSSFGN FSKPHASYQQ SPSSSSHHRD IDRQSQDLLS GIVVPTSATN 360
EAPVEDNKNE NQDDSIWLKE KWSIGEIPLG EPPQRHVSHV F
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Zm.7719 | 0.0 | ear| embryo| meristem| pedicel| shoot |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the adaxial face of the collar, nodes and the basal region of elongating internodes. {ECO:0000269|PubMed:18953406}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU956931 | 0.0 | EU956931.1 Zea mays clone 1577703 nucleic acid binding protein mRNA, complete cds. |
