PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089557_P01
Common NameZm.127435
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 219aa    MW: 22524.3 Da    PI: 8.8122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089557_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004795117123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ Cgk++++   L  H  +H
  GRMZM2G089557_P01  95 YECSVCGKVYTSYQALGGHKTSH 117
                        99**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-994117No hitNo description
PfamPF139122.5E-1394119IPR007087Zinc finger, C2H2
PROSITE profilePS501579.97295117IPR007087Zinc finger, C2H2
SMARTSM003550.02595117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-9149176No hitNo description
PfamPF139124.5E-12153178IPR007087Zinc finger, C2H2
SMARTSM003550.16154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637154181IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MALDAALDVC SKTPSPSPPT VDSSARGGRR SKRRAGSPAS DGGGGVDGND QPEQEEYLAQ  60
CLLMLSHGLP GDGAAPPSAA AKAKAIQQQH QHGRYECSVC GKVYTSYQAL GGHKTSHRKP  120
PVVAPAPAPA PGGEADASLS GGTAHAAAEK EKTHRCSVCK RTFQSGQALG GHKRLHYEAK  180
AKDADAVAAT AVLQNLDLNL PAEGAPPEPK RARTMLLLA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1274350.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089557
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089557_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701510.0BT070151.1 Zea mays full-length cDNA clone ZM_BFc0132P01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148240.21e-157zinc finger, C2H2 type family protein
RefseqXP_020396776.11e-157zinc finger protein AZF1
TrEMBLC0PPD21e-155C0PPD2_MAIZE; Zinc finger protein AZF1
STRINGGRMZM2G089557_P011e-156(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.16e-26C2H2 family protein