PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089619_P01
Common NameLOC100285642, ZHD15
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 300aa    MW: 31130.8 Da    PI: 7.2236
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089619_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.94.1e-272371558
        ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                       +YkeC++NhAa++Gg+a+DGCgE+m+s     ++++lkCaACgCHR+FHRr  +
  GRMZM2G089619_P01 23 KYKECMRNHAAAMGGQAFDGCGEYMAS-----SPDTLKCAACGCHRSFHRRALA 71
                       8*************************9.....7899***************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015663.2E-232369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.6E-222369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-192368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.6792469IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.18E-18164235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-30167237IPR009057Homeodomain-like
TIGRFAMsTIGR015658.1E-27177234IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMDHLSLVPY DGAGGGGDAA GGKYKECMRN HAAAMGGQAF DGCGEYMASS PDTLKCAACG  60
CHRSFHRRAL AAASPCAPPV FFRPPPPPAL PAPPQQHFHH HHHHQAALQG FLPSVPVPVP  120
APPPHLALPY HAVPNAAAAP PWLAARAGSE TPPRLDDFGV GLAPGSGAGS GSGSFGRKRF  180
RTKFTPEQKE RMREFAEKQG WRIQRNDDGA LDRFCDEIGV KRQVLKVWMH NHKNQLASNS  240
VAAAAAAGIG LSPAAGAGTA TGTGTGVGIT GDGDDDDDDD TDDSPPRAAV SSPSPSPISV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-251782341874ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.650090.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089619
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089619_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270250.0KJ727025.1 Zea mays clone pUT4006 ZF-HD transcription factor (ZHD15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152005.20.0ZF-HD homeobox protein
SwissprotQ7X7N31e-83ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A060CVP00.0A0A060CVP0_MAIZE; ZF-HD homeobox protein (Fragment)
STRINGGRMZM2G089619_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-24homeobox protein 31