PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089686_P02
Common NameZEAMMB73_199899, Zm.125056
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 188aa    MW: 21150.9 Da    PI: 8.487
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089686_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.6e-1039682247
                       T.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 22 g.....tWktIartmgkgRtlkqcksrwqky 47
                       +     +W++Iar+++ gRt++++k++w+++
  GRMZM2G089686_P02 39 RvtracRWSAIARCLP-GRTDNEIKNYWRTH 68
                       1555668*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.43E-74472IPR009057Homeodomain-like
CDDcd001671.27E-74569No hitNo description
PROSITE profilePS500906.3654569IPR017877Myb-like domain
PfamPF002493.2E-74568IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-114569IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
DYSSPALLVF ATSACALVGV GVGGRRLTLL GKLKRCRRRV TRACRWSAIA RCLPGRTDNE  60
IKNYWRTHFK KARPSRRARA QLLHQYQLQQ QEQRRQYLQL LQPQQLQQQQ LGVVKQQQLE  120
QQSPPEPHHQ AMMDSLQSTA ACYCSPVPEE CCPLPADDDA VLWDSLWRLV DGDGCGDGDG  180
DGSSGGDY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089686
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089686_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9604500.0EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148697.11e-101uncharacterized protein LOC100282313
TrEMBLA0A3L6DET81e-100A0A3L6DET8_MAIZE; Transcription factor MYB57
TrEMBLB6T6351e-100B6T635_MAIZE; MYB305
STRINGGRMZM2G089686_P011e-101(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-11myb domain protein 79