PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G090332_P01
Common NameLOC103648425
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 194aa    MW: 20797.3 Da    PI: 6.3634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G090332_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-057092123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C  C + F++   L  H+++H
  GRMZM2G090332_P01 70 YTCAFCRREFKSAQALGGHMNVH 92
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-66796No hitNo description
PROSITE profilePS5015710.9497097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAPTSSTELA HVKHITLHQF LKQQQLLQHR LKPAVMWGWP ATAAAIGRHV PDDVADDDDG  60
LGGAWPPRSY TCAFCRREFK SAQALGGHMN VHRRDRAKMR GGHHGSAAAQ APQLGGAASQ  120
ATDETPHAAP AAKYAVLYPI LNSNAAAGVL IPSGDVLLSG PVALQAAAHD LCHVSDDDDE  180
EDSDVDLELR LWWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-136592229superman protein
2l1o_A3e-136592229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G090332
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G090332_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629813e-48AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBankAP0149603e-48AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126123e-48CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671121.11e-140transcriptional regulator SUPERMAN
TrEMBLA0A1D6E1J11e-139A0A1D6E1J1_MAIZE; Transcriptional regulator SUPERMAN
TrEMBLA0A3L6FWT51e-139A0A3L6FWT5_MAIZE; Zinc finger protein 10
STRINGGRMZM2G090332_P011e-140(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.18e-21C2H2 family protein