PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G091433_P03
Common Namecl181_1c, ZEAMMB73_475550
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YC
Protein Properties Length: 107aa    MW: 12009 Da    PI: 10.2194
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G091433_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.61.6e-197861998
              NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                       +++P arikki++adedv +i+  +Pvl+s++ elf+ +l  r++  + ++  +tl+   ++++v+r   fdfl+++v +
  GRMZM2G091433_P03  7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRSLELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVSK 86
                       579*************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.43E-21388IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.5E-26372IPR009072Histone-fold
PfamPF008082.0E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRSLE LFLQDLIDRT YEITLQSGAK  60
TLNSFHLKQC VKRYSSFDFL TEVVSKVPDL GGADSCGDER GLPRRRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-24271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.966881e-158ear| embryo| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G091433
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G091433_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649051e-177AF464905.1 Zea mays repressor protein (DrAp1) mRNA, complete cds.
GenBankBT0358531e-177BT035853.1 Zea mays full-length cDNA clone ZM_BFb0086A16 mRNA, complete cds.
GenBankHQ8587521e-177HQ858752.1 Zea mays clone UT1461 CCAAT transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105089.12e-71uncharacterized protein LOC541965
SwissprotA0JPP17e-31NC2A_RAT; Dr1-associated corepressor
TrEMBLB6SI555e-70B6SI55_MAIZE; Repressor protein
TrEMBLF1DJZ45e-70F1DJZ4_MAIZE; CCAAT transcription factor (Fragment)
TrEMBLQ8W0W65e-70Q8W0W6_MAIZE; CCAAT-HAP5-transcription factor 59
STRINGGRMZM2G091433_P018e-71(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.17e-53nuclear factor Y, subunit C11