PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G091964_P03
Common Nameuaz7c01g06
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 255aa    MW: 26651.7 Da    PI: 9.9773
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G091964_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.49.7e-33174230158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  GRMZM2G091964_P03 174 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGNGGRF 230
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-36172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.498173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-28175230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-25176198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.5E-25207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSSMESRPGR TNLVEPIGHG AALPSGGQAV QPWWTSSGAV LGAVSPAVVA VAPGSGTGIS  60
LSSSPAGGSG GGGAAKGAAS DESSEDSRRS GEPKDGSASQ EKNHATSQIP ALAPEYLAPY  120
SQLELNQSIA SAAYQYPDPY YAGMVAPYGS HAVAHFQLPG LTQSRMPLPL EVSEEPVYVN  180
AKQYHGILRR RQSRAKAELE KKVVKARKPY LHESRHQHAM RRARGNGGRF LNTKKSDSGA  240
PNGKAEPEKA STIVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-23174238266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.97330.0cell lignification| ear| leaf| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G091964
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G091964_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638030.0BT063803.1 Zea mays full-length cDNA clone ZM_BFc0109B09 mRNA, complete cds.
GenBankEU9620760.0EU962076.1 Zea mays clone 240068 nuclear transcription factor Y subunit A-1 mRNA, complete cds.
GenBankKJ7282930.0KJ728293.1 Zea mays clone pUT6573 CCAAT-HAP2 transcription factor (CA2P16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676720.11e-175uncharacterized protein LOC100282719 isoform X1
RefseqXP_020407263.11e-175uncharacterized protein LOC100282719 isoform X1
TrEMBLA0A317YAL00.0A0A317YAL0_MAIZE; Nuclear transcription factor Y subunit A-7
STRINGGRMZM2G091964_P011e-174(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-34nuclear factor Y, subunit A7