PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G092091_P02
Common Namegpm693
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 209aa    MW: 23155.3 Da    PI: 6.6792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G092091_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.5e-114088355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  GRMZM2G092091_P02 40 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 88
                       58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.12E-113592No hitNo description
SuperFamilySSF474594.45E-1735104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1737104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.4473787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-84088IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-104393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEEGNRKISP KIQSKEDSSD GDGTKEDYVH IRAKRGQATN SHSLAERLRR KKISERMKLL  60
QDLVPGCSKI TGKAVMLDEI INYVQSLQRQ VEFLSMKLST VNPELGFDIE QIISKQMMLS  120
QDRHLAFYGV DPGSSSLTAP FNQGIVQPAM MCNISNPADV LHGTIHDVST MNQIPSMWEG  180
LQSMPQMNFN PGVAADSGTN NSGSMKIEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1032010.0ear| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G092091
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G092091_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353480.0BT035348.1 Zea mays full-length cDNA clone ZM_BFb0057A01 mRNA, complete cds.
GenBankEU9745040.0EU974504.1 Zea mays clone 450957 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131789.11e-154uncharacterized protein LOC100193160
RefseqXP_008647764.11e-154transcription factor bHLH62 isoform X1
RefseqXP_008647791.11e-154transcription factor bHLH62 isoform X1
RefseqXP_020395971.11e-154transcription factor bHLH62 isoform X1
RefseqXP_020396007.11e-154transcription factor bHLH62 isoform X1
SwissprotQ6NKN91e-52BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A1D6L3071e-153A0A1D6L307_MAIZE; Transcription factor bHLH62
STRINGGRMZM2G092091_P011e-153(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]