PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G096016_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 192aa    MW: 21052.7 Da    PI: 10.5602
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G096016_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA90.52.1e-2871129158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRaklee..ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        dep+YVNaKQ+++Il+RR +Rak ++  ++++ + srkpylheSRh hAlrR+Rg+gGrF
  GRMZM2G096016_P02  71 DEPVYVNAKQFNGILRRRLARAKRAAatDRRV-SGSRKPYLHESRHLHALRRARGTGGRF 129
                        79********************9877645666.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-3069132IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.52770132IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.7E-2672129IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-217395IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-21106129IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAAHPELLLL DRYQYHHHGR FDLTVGQSMV LNNDSAIAGH QIYGATAYYH PFYGAQALHG  60
RVLLPPAIAA DEPVYVNAKQ FNGILRRRLA RAKRAAATDR RVSGSRKPYL HESRHLHALR  120
RARGTGGRFL NTRSRDGDPE AGSAGKAARL QEEDRQADAV FLSSLASMAG GDATRWPSAP  180
SRGRGCCDLL KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-1671131261HAPB protein
4g92_A2e-1671131261HAPB protein
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G096016
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G096016_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682170.0EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152344.21e-137nuclear transcription factor Y subunit A-10
TrEMBLA0A1D6F9G61e-135A0A1D6F9G6_MAIZE; Nuclear transcription factor Y subunit A-10
STRINGGRMZM2G096016_P011e-136(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.34e-22nuclear factor Y, subunit A10