PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G096600_P01
Common NameLOC100282378, ZEAMMB73_293494
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 341aa    MW: 38067.1 Da    PI: 8.3986
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G096600_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.5e-146198340
                TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                       +k+C Ckks+Clk+YC Cfa g +Cs++C C+ C+Nke
  GRMZM2G096600_P01 61 CKHCACKKSRCLKLYCPCFAGGGYCSDKCGCQPCFNKE 98
                       89**********************************97 PP
2TCR331.2e-10146166323
                TCR   3 kkgCnCkkskClkkYCeCfaa 23 
                        ++gCnCkks+ClkkYC+C+++
  GRMZM2G096600_P01 146 RRGCNCKKSSCLKKYCDCYQN 166
                        589****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.2E-1459100IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163423.0760184IPR005172CRC domain
PfamPF036383.6E-106298IPR005172CRC domain
SMARTSM011140.01144170IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-6147166IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEATPISMKP PAPPPVTLEP IELSTHAVGL TELERSSMNQ LAIAPDPKRQ RVEEAADGNG  60
CKHCACKKSR CLKLYCPCFA GGGYCSDKCG CQPCFNKEAF SETVQTTRKV LLSRQKRMSM  120
KINRRPEANA EPMEDAHHSS SSTPPRRGCN CKKSSCLKKY CDCYQNPFGK NDGIIADDSK  180
RYLYTGADLD HSEGEHDFVV ERSPRLQSPM SKESSFHQTP PHLRASSRDA HVFPQAVSQW  240
QALPRSWHCS NKRNGNDRAM DDSSANGNYK SSSHDWQMSK LEDGYSISRC VQILNGMVEL  300
SQVEKSVAPD VFLLPGNREI FVSLGGDVRA MWLKRKIQHL A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.970340.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G096600
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G096600_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699200.0BT069920.1 Zea mays full-length cDNA clone ZM_BFb0331I09 mRNA, complete cds.
GenBankEU9606930.0EU960693.1 Zea mays clone 227552 CXC domain containing TSO1-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654968.10.0CXC domain containing TSO1-like protein 1 isoform X1
TrEMBLB6T6S80.0B6T6S8_MAIZE; CPP transcription factor
STRINGGRMZM2G096600_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.19e-34Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]