PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G097349_P01
Common NameLOC100285049, Zm.97980
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 363aa    MW: 38897.1 Da    PI: 6.1252
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G097349_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-18133185456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++++ +q+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  GRMZM2G097349_P01 133 KRRLSVDQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 185
                        447999**********************************************9 PP
2HD-ZIP_I/II128.33.2e-41131223193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        e+krrls +qv++LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++e++
  GRMZM2G097349_P01 131 ERKRRLSVDQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALLSHNKKLQAEIM 222
                        69**************************************************************************************9997 PP

        HD-ZIP_I/II  93 e 93 
                        +
  GRMZM2G097349_P01 223 A 223
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-19124189IPR009057Homeodomain-like
PROSITE profilePS5007116.811127187IPR001356Homeobox domain
SMARTSM003892.6E-18130191IPR001356Homeobox domain
CDDcd000866.73E-18132188No hitNo description
PfamPF000468.5E-16133185IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-19134194IPR009057Homeodomain-like
PRINTSPR000315.4E-6158167IPR000047Helix-turn-helix motif
PROSITE patternPS000270162185IPR017970Homeobox, conserved site
PRINTSPR000315.4E-6167183IPR000047Helix-turn-helix motif
PfamPF021831.7E-12187226IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKPMATNGMA PSFYPANFLL QMQQALPHHY QQQEQHHEGH DDEDHEAAHH LLAPPPAALV  60
SPFLHDFGGA MAAAPPPPML AGGFGGKRMY PDVGGMAGDD SHHLHAEPQQ QQEQQASDDE  120
EEGSAAVGGG ERKRRLSVDQ VRTLERSFEV ANKLEPERKA QLARALGLQP RQVAIWFQNR  180
RARWKTKQLE KDYDALRRQL DAARAENDAL LSHNKKLQAE IMALKGGGGG GGRQEAASEL  240
INLNVRETEA SCSENNSSEI NGLDVSRPDP AAGESPAMNS YRGGLPFYAS AAARADIHHQ  300
LLHSGGQPSP AAAAPPKMEL APGSPPATAG GGGGTFGSLL CGAAVDEPPP FWSWADGHHT  360
CFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135ERKRRL
2179187RRARWKTKQ
3224232KGGGGGGGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.979800.0cell culture| cell lignification| pedicel| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G097349
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G097349_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9706750.0EU970675.1 Zea mays clone 348767 homeobox-leucine zipper protein HAT7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151416.20.0homeobox-leucine zipper protein HAT7
SwissprotA2Z7345e-83HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL55e-83HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A1D6KVR50.0A0A1D6KVR5_MAIZE; Homeobox-leucine zipper protein HAT7
TrEMBLA0A317Y3D50.0A0A317Y3D5_MAIZE; Homeobox-leucine zipper protein HOX23
STRINGGRMZM2G097349_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.15e-46HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]