PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G097788_P01
Common NameLOC103633664, Zm.1454
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 89aa    MW: 9512.05 Da    PI: 5.0643
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G097788_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07248346
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       +W++ E  ++ +a + +  +   +W+++a+ +g g+t+++ + ++ +
  GRMZM2G097788_P01  2 SWSQSENARFERALATYDRDtprRWELVAAAVGGGKTAEDARRHYAD 48
                       7*****************99************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.435150IPR017877Myb-like domain
PfamPF002494.2E-6148IPR001005SANT/Myb domain
SuperFamilySSF466893.1E-10257IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSWSQSENAR FERALATYDR DTPRRWELVA AAVGGGKTAE DARRHYADLV DDVGDIESGG  60
YGANDQNANG GANGSNGNNR GGRANRPQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-163711178RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.14541e-152silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G097788
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G097788_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9680892e-63EU968089.1 Zea mays clone 314034 MYB-like transcription factor DIVARICATA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001339187.15e-58protein RADIALIS-like 3
SwissprotQ6NNN01e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A1D6JWA51e-56A0A1D6JWA5_MAIZE; RAD-like 3
TrEMBLA0A317YDK91e-56A0A317YDK9_MAIZE; Protein RADIALIS-like 3
STRINGGRMZM2G097788_P012e-57(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-18RAD-like 6