PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098443_P01
Common NameZEAMMB73_752087
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 259aa    MW: 29337 Da    PI: 9.8019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098443_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.71.5e-3040128185
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + 
  GRMZM2G098443_P01  40 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRG 128
                        89***************************955556888************************************************843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-4130142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-2837127IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-2638125No hitNo description
PROSITE profilePS5086313.71940145IPR003340B3 DNA binding domain
PfamPF023622.4E-2740141IPR003340B3 DNA binding domain
SMARTSM010193.7E-1840145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEFTTPPPAT RSGGGEERAA AEHNQHHQQQ HATVEKEHMF DKVVTPSDVG KLNRLVIPKQ  60
HAEKYFPLDA AANEKGLLLS FEDRTGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG  120
DTVSFGRGIS EAARDRLFID WRCRPDPPVV HHQYHHRLPL PSAVVPYAPW AAHAHHHHYP  180
ADGHTEPVTP CLCATLVATE MRASSSQLSL TRSNLSRPPQ PRIARVDGAQ PRPSSSPRQP  240
QSLWCRSCQP QPRRTADVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-63351453114B3 domain-containing transcription factor NGA1
5os9_B2e-63351453114B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098443
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098443_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270010.0KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657605.11e-139B3 domain-containing protein Os03g0120900
SwissprotQ8LMR98e-82Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLK7UV270.0K7UV27_MAIZE; B3 domain-containing transcription factor NGA2
STRINGGRMZM2G098443_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-63B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]