PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098986_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20509.3 Da    PI: 10.3116
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098986_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.7e-2686135251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                        ri++ + rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+ly y+s
  GRMZM2G098986_P01  86 RIQDRTSRQVRFSKRRSGLFKKAHELSVLCDAEVAMVVFSPAGRLYHYAS 135
                        89**********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.53977137IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-3177136IPR002100Transcription factor, MADS-box
CDDcd002655.50E-3479147No hitNo description
PRINTSPR004047.3E-277999IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-2679156IPR002100Transcription factor, MADS-box
PfamPF003196.6E-2686133IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-2799114IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-27114135IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDQWGSETRP DNLFRSSYGY DPPAVRCHTA AELVTTQSVE LVVRLFRSWS VVLFRVLGKM  60
DAEAARRKQV APPQEKRKRG RLELRRIQDR TSRQVRFSKR RSGLFKKAHE LSVLCDAEVA  120
MVVFSPAGRL YHYASLGTSI EKTFCRYWDL ANTDIDLNIE ARDSRDNYNT QVKHINS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-1879167393MEF2C
5f28_B4e-1879167393MEF2C
5f28_C4e-1879167393MEF2C
5f28_D4e-1879167393MEF2C
6byy_A5e-1879165394MEF2 CHIMERA
6byy_B5e-1879165394MEF2 CHIMERA
6byy_C5e-1879165394MEF2 CHIMERA
6byy_D5e-1879165394MEF2 CHIMERA
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098986
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098986_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9431510.0EU943151.1 Zea mays clone 1571160 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001358011.12e-77uncharacterized protein LOC115072894
TrEMBLA0A1B6PIN37e-47A0A1B6PIN3_SORBI; Uncharacterized protein
STRINGSb07g026180.16e-48(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.27e-23AGAMOUS-like 71