PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G099408_P01
Common NameLOC103655057, MADS25, ZEAMMB73_668770
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27532.5 Da    PI: 9.6109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G099408_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.3e-141150342
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       i+n+  r  t+ +R +g+ KKA+EL +LC+++ +v+++++
  GRMZM2G099408_P01 11 ISNNATRRATYKRRTQGLEKKASELATLCGIKLCVVVYGE 50
                       99************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.895150IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-15160IPR002100Transcription factor, MADS-box
CDDcd002666.41E-23275No hitNo description
SuperFamilySSF554559.68E-19391IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-5323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MARKKVNLQW ISNNATRRAT YKRRTQGLEK KASELATLCG IKLCVVVYGE GEAQPKVWPS  60
HEEAKQLLLK FNGMLDVGSL KKTKNQEEFL HGRSLRLREQ VSKLDLENRE RETLDLLHDS  120
MCGGRLAGGE GRGKDELLSL REMVETKMRR IKARLQQLVG QGVLPPKPPL PAAPSSLQAQ  180
ASCYTYNNMQ SMALLEEHRH SQQDWRAVHN LAPNYSPFAG SSSEPVGCEV TTHPYNNLGA  240
CSGLPSA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G099408
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G099408_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275210.0KJ727521.1 Zea mays clone pUT5380 MADS transcription factor (MADS25) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680091.10.0MADS-box transcription factor PHERES 2
TrEMBLA0A3L6F4210.0A0A3L6F421_MAIZE; Agamous-like MADS-box protein AGL36
TrEMBLK7TUW30.0K7TUW3_MAIZE; MADS transcription factor
STRINGGRMZM2G099408_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-22M-type_MADS family protein