PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G099461_P01
Common NameCA5P15
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YC
Protein Properties Length: 203aa    MW: 21295.6 Da    PI: 4.5894
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G099461_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.91.4e-158016219100
              NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100
                         +lP+ r+k+i+++d d+k++++ea  l++ a elf+  l+  +   a   +rrt++   + aa  ++  + dfl+d    +e
  GRMZM2G099461_P01  80 PALPVGRVKRIMRVDRDIKKVTSEAALLIAAATELFLGSLATGAHAAAARRSRRTVRAVHVRAAArAHRPTADFLLDCLAAEE 162
                        579**********************************************************88761566799*****987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.0E-1980143IPR009072Histone-fold
SuperFamilySSF471132.51E-1681158IPR009072Histone-fold
PfamPF008081.3E-1382143IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSPATADEPS VAMEEQPGKE SEEAADAMEE QLGKESEEAA ESAEEVGQVE EEPEEGVDPA  60
EAMEKAGEEA EAEEGASLRP ALPVGRVKRI MRVDRDIKKV TSEAALLIAA ATELFLGSLA  120
TGAHAAAARR SRRTVRAVHV RAAARAHRPT ADFLLDCLAA EEEAPRARQT AGSARGGGGG  180
GGGNAKPLPR GTRRIDAFFQ KVT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.364380.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G099461
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G099461_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269580.0KJ726958.1 Zea mays clone pUT3656 CCAAT-HAP5 transcription factor (CA5P15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266687.11e-134histone-like transcription factor and archaeal histone family protein
TrEMBLA0A060D5571e-136A0A060D557_MAIZE; CCAAT-HAP5 transcription factor (Fragment)
STRINGGRMZM2G099461_P011e-137(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628
Representative plantOGRP94721213