PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G099577_P01
Common NameMADS47, ZEAMMB73_103202, Zm.130889
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27134.3 Da    PI: 11.0319
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G099577_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-175392241
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                       ri+nk  rqvt +kR+ g+lKKA+EL  LC+a+va+i+f 
  GRMZM2G099577_P01 53 RIDNKESRQVTQCKRKGGLLKKASELHLLCGAQVAIIVFK 92
                       8*************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.49E-194495IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.7684491IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-2044103IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-154666IPR002100Transcription factor, MADS-box
PfamPF003191.8E-175393IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-156681IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-1581102IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAYIAFVLPT QIRGGPRANQ LRLQEVEQRP PPRAMVKPGK RTSRGRQKIE IRRIDNKESR  60
QVTQCKRKGG LLKKASELHL LCGAQVAIIV FKRRDPERKE VPVPPRGQRD DGGLAFAMGT  120
PSVDHVLHRC GLLHADEGLT AIQDVGAIAA ERAVMEARAG QTEQTRALVE AEKARNDAIG  180
QKVLQAVEVT GRRFWWEVDV GVLGEAELPV FTSQLQRLRD SVRLQANKSR TSATPAGVAA  240
PWLPLG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G099577
Function -- GeneRIF ? help Back to Top
  1. interaction with Opaque2 activates ZmMADS47 on zein gene promoters.
    [PMID: 27077660]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G099577_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276720.0KJ727672.1 Zea mays clone pUT5599 MADS transcription factor (MADS47) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658589.31e-178DNA binding protein isoform X1
TrEMBLK7VDU81e-176K7VDU8_MAIZE; MADS transcription factor
STRINGGRMZM2G099577_P011e-177(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP2001522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-20AGAMOUS-like 62
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Qiao Z, et al.
    ZmMADS47 Regulates Zein Gene Transcription through Interaction with Opaque2.
    PLoS Genet., 2016. 12(4): p. e1005991
    [PMID:27077660]