PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G100583_P01
Common NameLOC100285116, ZEAMMB73_313761
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 228aa    MW: 24313.9 Da    PI: 11.07
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G100583_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.63.2e-29221621128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                        lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd      + +a ++ e yfF+ r         ++rat+sg+W+  g
  GRMZM2G100583_P01  22 LPPGFRFRPTDEELVVQYLRRKALGAPLPA-AVIPVVrDLYSLDPWDAVDvpaAPDAsSQGERYFFAVRPAGG--VGSARRATASGRWRPAG 110
                        79****************************.8899999********98522333333144599****998754..457889*********** PP

                NAM  88 kdkevlsk.....kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                        k+k+v        ++ lvg+k+ ++f       k+ a  +    Wvmheyrl
  GRMZM2G100583_P01 111 KEKPVALPrpcggGSLLVGVKRAMAFVprrkkkKAAAAAALAIGWVMHEYRL 162
                        ******99899877777**********76543222333344779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-4019188IPR003441NAC domain
PROSITE profilePS5100540.84222188IPR003441NAC domain
PfamPF023657.0E-2123162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAEGAPVLV RHAGGVEELR QLPPGFRFRP TDEELVVQYL RRKALGAPLP AAVIPVVRDL  60
YSLDPWDAVD VPAAPDASSQ GERYFFAVRP AGGVGSARRA TASGRWRPAG KEKPVALPRP  120
CGGGSLLVGV KRAMAFVPRR KKKKAAAAAA LAIGWVMHEY RLAAPLHKHG CSLAQAQGEW  180
VVCRVFQKGS GRPRRRRQRP VSPSPSSASS CVTDGSSSSS SDMDEVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-262219017167NO APICAL MERISTEM PROTEIN
1ut4_B3e-262219017167NO APICAL MERISTEM PROTEIN
1ut7_A3e-262219017167NO APICAL MERISTEM PROTEIN
1ut7_B3e-262219017167NO APICAL MERISTEM PROTEIN
3swm_A3e-262219020170NAC domain-containing protein 19
3swm_B3e-262219020170NAC domain-containing protein 19
3swm_C3e-262219020170NAC domain-containing protein 19
3swm_D3e-262219020170NAC domain-containing protein 19
3swp_A3e-262219020170NAC domain-containing protein 19
3swp_B3e-262219020170NAC domain-containing protein 19
3swp_C3e-262219020170NAC domain-containing protein 19
3swp_D3e-262219020170NAC domain-containing protein 19
4dul_A3e-262219017167NAC domain-containing protein 19
4dul_B3e-262219017167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RRKKKK
2191198RPRRRRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.957210.0glume| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G100583
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G100583_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865710.0BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds.
GenBankDQ2454910.0DQ245491.1 Zea mays clone 16115 mRNA sequence.
GenBankEU9709060.0EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151483.11e-161uncharacterized protein LOC100285116
TrEMBLA0A3L6EWT31e-160A0A3L6EWT3_MAIZE; NAC domain-containing protein 41
TrEMBLB6U0Z11e-160B6U0Z1_MAIZE; NAC domain containing protein 84
STRINGGRMZM2G054252_P021e-112(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-27NAC domain containing protein 41
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]