PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G100709_P01
Common NameLOC100281236, Zm.132463
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 256aa    MW: 28085.3 Da    PI: 7.9324
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G100709_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like941.2e-291871255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       pr+rWt+eLH++Fv ave LGG+++AtPk+il+lm+vkg+++ h+kSHLQ+YR+
  GRMZM2G100709_P01 18 PRMRWTEELHRQFVLAVECLGGQDEATPKQILQLMGVKGVSICHIKSHLQMYRS 71
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-281473IPR009057Homeodomain-like
PROSITE profilePS5129410.7891474IPR017930Myb domain
TIGRFAMsTIGR015573.9E-231871IPR006447Myb domain, plants
SuperFamilySSF466892.69E-161872IPR009057Homeodomain-like
PfamPF002491.6E-61970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VLAVECLGGQ DEATPKQILQ LMGVKGVSIC  60
HIKSHLQMYR SSSSSSSSTH NQSSSLQKLT STTASNSKRV FLSREDHASQ ADGSTPASDE  120
NIYTTMLCGC SHSTPYQIRP SLEGVFRGLE QTRMLATTEK SISRPSHTEK QHTGCDLTLS  180
IGLWAEDASS NDVDGSSSIS EELMPAAPAA GARRAAAVKE ESEAAALNLD LTISSSYWLA  240
LTSDDGARRR TAGWRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-151972457Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-151972457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-151972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-151972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-151972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-151972356Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-151972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-151972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-151972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-151972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-151972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-151972457Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G100709
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G100709_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560370.0EU956037.1 Zea mays clone 1555999 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647790.10.0myb-like DNA-binding domain, SHAQKYF class family protein isoform X1
TrEMBLB6STH20.0B6STH2_MAIZE; Myb-like DNA-binding domain, SHAQKYF class family protein
STRINGGRMZM2G100709_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.15e-25G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]