PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G101350_P01
Common NameZm.161291
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 246aa    MW: 26086.4 Da    PI: 8.4753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G101350_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09156203455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  GRMZM2G101350_P01 156 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 203
                        8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.73E-11150207No hitNo description
SuperFamilySSF474593.53E-15150208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-15152207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-7156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-9158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MARCQGTVES LCQGLLDLDD DKFGAMCSAF GYLQEWPDLG AAMCGANLAV PPAVATPSAG  60
DGNDSSSCSV SGGLRKRRPD AYLDAKGGAN GMNKRPRGKQ QPSGLSEIAA APGKGKQERP  120
KAGTKKKAEA AAAAAAAGQK TDYIHVRARR GQATDSHSLA ERVRRERISE RMRYLQELVP  180
GCSKVTGKAG MLDEIINYVQ SLQKQVEVNG TAAAWDIGSQ NLFSGFDAQF QSVESGCLLD  240
NLKMEM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.205980.0endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G101350
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G101350_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0834860.0BT083486.1 Zea mays full-length cDNA clone ZM_BFb0002M11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288445.11e-136transcription factor bHLH49
TrEMBLC4IY390.0C4IY39_MAIZE; Uncharacterized protein
STRINGGRMZM2G101350_P021e-136(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.19e-29cryptochrome-interacting basic-helix-loop-helix 1