PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G102938_P02
Common NameLOC100193386
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 164aa    MW: 18066.5 Da    PI: 6.7877
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G102938_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.79.9e-1436113184
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                        f +v+ +s v +  +lv+p +f ++  +  + +  l     + rsW+v +   + +++  l++ W++F+++ngL+ gD +vF+l
  GRMZM2G102938_P02  36 FTSVMRKSQVQNPFQLVIPVRFHRHLPE-ARAPAVLL---CRDRSWTVSY--AGVGKWKRLQGAWRDFARDNGLRLGDACVFEL 113
                        7889999***************955532.23442333...467*******..99999999**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-2329142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-1831114IPR015300DNA-binding pseudobarrel domain
CDDcd100178.30E-1834142No hitNo description
SMARTSM010191.3E-636144IPR003340B3 DNA binding domain
PROSITE profilePS5086311.94236144IPR003340B3 DNA binding domain
PfamPF023621.3E-1136114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEVRGSAPSM KPKVEPPLEA SHDWEVTPLS GDNPFFTSVM RKSQVQNPFQ LVIPVRFHRH  60
LPEARAPAVL LCRDRSWTVS YAGVGKWKRL QGAWRDFARD NGLRLGDACV FELLVPSTDA  120
TQGDGDGSKD QGEVVFRVQV LRGGLPAEIT SRGATSDDPL VIVD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1240200.0ear| endosperm
Zm.1366500.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G102938
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G102938_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687660.0EU968766.1 Zea mays clone 324000 B3 DNA binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001339180.11e-118uncharacterized protein LOC100193386
RefseqXP_023155999.11e-118uncharacterized protein LOC100193386 isoform X2
TrEMBLB6TUV11e-116B6TUV1_MAIZE; B3 DNA binding domain containing protein
STRINGGRMZM2G102938_P011e-111(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-06B3 family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]