PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G103085_P01
Common NameLOC100285604
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 236aa    MW: 25015.3 Da    PI: 8.9363
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G103085_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-20111160255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    r +r +lg+f+tae+Aa+a++ a+ +l+g
  GRMZM2G103085_P01 111 QYRGVRRRP-WGKWAAEIRDPR----RaARKWLGTFDTAEDAARAYDVAAVELRG 160
                        59*******.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-34111174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31111169IPR001471AP2/ERF domain
PROSITE profilePS5103225.541111168IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23111169IPR016177DNA-binding domain
CDDcd000181.97E-27111167No hitNo description
PRINTSPR003672.7E-11112123IPR001471AP2/ERF domain
PfamPF008474.9E-13112160IPR001471AP2/ERF domain
PRINTSPR003672.7E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAAPRLERGG FQLPNTEQEN SLFLRALISV VSGDTAALLP EAAAVEAPAA PVACARCGAD  60
GCAAAGCCEL VAGSSSDSDD AGCSGTRANG GGLGLGLGAS KRRGRGRKVI QYRGVRRRPW  120
GKWAAEIRDP RRAARKWLGT FDTAEDAARA YDVAAVELRG QRAKLNFPAR AAAAAPAAVQ  180
PPHHRPLPDR SLRENCGSNA ASPVHVALAP TTQQNIWEGL NEIMMMEEER SFWSMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-22103168672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100117KRRGRGRKVIQYRGVRRR
2101118RRGRGRKVIQYRGVRRRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G103085
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G103085_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749750.0EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241699.11e-169ethylene-responsive element binding protein 2
TrEMBLB6UCL01e-168B6UCL0_MAIZE; Ethylene-responsive element binding protein 2
STRINGGRMZM2G103085_P011e-169(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.16e-19ERF family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]