PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104204_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 233aa    MW: 25568.6 Da    PI: 6.3696
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104204_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.11.9e-1060113356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t+eq+e Le  F+++r++ + ++ +L +++gL+ +qV vW   rRa  k
  GRMZM2G104204_P01  60 KKRRLTDEQVEMLELSFREERKLETGRKVHLGAEIGLDPQQVAVWVPKRRAPPK 113
                        56689****************************************999998666 PP
2HD-ZIP_I/II69.38.1e-2360122264
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64 
                        kkrrl++eqv++LE sF+ee+kLe+ rKv+l  e+gl+p+qvavW   rRA  k k lE+++ 
  GRMZM2G104204_P01  60 KKRRLTDEQVEMLELSFREERKLETGRKVHLGAEIGLDPQQVAVWVPKRRAPPKRKLLEEEVG 122
                        9**********************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.0E-1053117IPR009057Homeodomain-like
PROSITE profilePS5007112.35755115IPR001356Homeobox domain
SMARTSM003891.5E-558119IPR001356Homeobox domain
PfamPF000468.5E-860113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1060114IPR009057Homeodomain-like
CDDcd000864.02E-760110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEQYDGLFPP AYVDSSSSLL LVPNANGTAQ EERPRARRRR RRAARCGGGG GELDGGGDHK  60
KRRLTDEQVE MLELSFREER KLETGRKVHL GAEIGLDPQQ VAVWVPKRRA PPKRKLLEEE  120
VGQYIYNIEH AFRGHMPGWK VTRLKDKLVL AEEELTRFRS AGNDAVSGDG GDVMARAVCS  180
GSPSSSFSTG TCQQPGGGGG GGDHLGDDDL LYVPDYAYAD SSVVEWFSLY GLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13241RPRARRRRRR
23644RRRRRRAAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.229590.0pedicel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104204
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104204_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399591e-179BT039959.1 Zea mays full-length cDNA clone ZM_BFc0054M14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140916.12e-92uncharacterized protein LOC100272993
SwissprotQ7XI851e-57HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A3L6E1Z99e-96A0A3L6E1Z9_MAIZE; Homeobox-leucine zipper protein HOX14
STRINGGRMZM2G104204_P011e-170(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Representative plantOGRP37761025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-19homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]