PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104246_P02
Common NameZEAMMB73_286736, Zm.22498
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 235aa    MW: 25453.6 Da    PI: 10.3324
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104246_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.31.5e-13153192242
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  GRMZM2G104246_P02 153 KKKCCNCRNSRCLKLYCECFASGTHCDG-CNCTNCFNNPEN 192
                        799*************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-13152192IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.177153235IPR005172CRC domain
PfamPF036388.0E-10154189IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAGKEQGGGG PPQRPPMPAA SMQPPIKKLV RQLDFNSAAL AGNPAMAAAA AAVSRALQPR  60
ALPAGFQHPQ HVRAAVPMVV PQQLHQRALP VMRPHPVVGH VPRHAVPLAV PVPQLRPMPP  120
QPVQRPPVAV PLKPDSPKPW ARLYEGKDST PTKKKCCNCR NSRCLKLYCE CFASGTHCDG  180
CNCTNCFNNP ENEVARREAI EATLERNPDA FRPKIGSSPH TNRNNVCSVV QILFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.224980.0embryo| meristem| ovary| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104246
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104246_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657203.11e-161protein tesmin/TSO1-like CXC 5
TrEMBLA0A1D6GB291e-160A0A1D6GB29_MAIZE; Protein tesmin/TSO1-like CXC 5
STRINGGRMZM2G104246_P011e-161(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.13e-29Tesmin/TSO1-like CXC domain-containing protein