PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104390_P01
Common NameLOC100285453, ZEAMMB73_131327
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 139aa    MW: 14865.9 Da    PI: 10.4066
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104390_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.4e-203569135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  GRMZM2G104390_P01 35 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 69
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2442965IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-162983IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-133069No hitNo description
Gene3DG3DSA:3.30.50.104.9E-163370IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.53E-133470No hitNo description
PROSITE patternPS0034403560IPR000679Zinc finger, GATA-type
PfamPF003201.7E-173569IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSSAAGRAPA PTPMGSADRC KIDGIVAAEK ATRSCVECRA TTTPMWRSGP TGPRSLCNAC  60
GIRYRKKRRQ ELGLDRKLQQ QQNNGEAKTD EAKDSSSNSS SGSSNLQVVQ KRRLLMGVEE  120
AALLLMTLSS SPTSTLLHG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.96500.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104390
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104390_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412270.0BT041227.1 Zea mays full-length cDNA clone ZM_BFc0190F05 mRNA, complete cds.
GenBankEU9723280.0EU972328.1 Zea mays clone 379713 GATA transcription factor 22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151818.11e-97GATA transcription factor 22
TrEMBLB4FVT92e-96B4FVT9_MAIZE; GATA transcription factor 16
STRINGGRMZM2G104390_P014e-97(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.19e-19GATA transcription factor 23
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]