PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G105140_P01
Common NameLOC103651472
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 345aa    MW: 36448.6 Da    PI: 7.3264
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G105140_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.71.8e-26175233259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  GRMZM2G105140_P01 175 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 233
                        699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-26173235IPR003657WRKY domain
SuperFamilySSF1182903.79E-24174235IPR003657WRKY domain
SMARTSM007743.2E-31174234IPR003657WRKY domain
PROSITE profilePS5081129.126175235IPR003657WRKY domain
PfamPF031062.1E-22176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAEHFNDWDL QAVVRSCGSV AHPEPAAAAP RADQPDAAPE PVPAPRRDEA PAARATPTTV  60
PVRRQGRASP PAAKAAALLY DLEYLDLDHR PFLLPAAPSP SPSPGPRAGA GGREREVMIS  120
FPAAAAASTS GTQQRASPPG RKPGARTSRP KRSKKSQLKK VVREMPAADG GSSSSDPWAW  180
RKYGQKPIKG SPYPRGYYKC SSMKGCMARK LVERSPAKPG VLIVTYMAEH CHPVPTQLNA  240
LAGTTRHKPS SGAAAEHSAA SSPKSHEHGG QAAGRGTGDR EHGSSETSTV AGEIGGEEIA  300
AVDDDSEFWP EGLDLDELLA PVDDDFDFEQ VIEAEDGVLG RRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19155236280Disease resistance protein RRS1
5w3x_D2e-19155236280Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G105140
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G105140_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-117AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-117AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675323.10.0WRKY transcription factor 22
TrEMBLA0A1D6NI900.0A0A1D6NI90_MAIZE; Putative WRKY transcription factor 14
STRINGGRMZM2G105140_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Representative plantOGRP1140847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-37WRKY family protein